PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020807m
Common NameCISIN_1g020807mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 322aa    MW: 36477.3 Da    PI: 5.3449
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020807mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.4e-17897198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                       ffkv       +s+rl +p  f+ ++ +++ ++ +++l +  g+ W v++    +++++++ +GW++Fv++n L++ D++v+k+dg+  f  +v
  orange1.1g020807m  8 FFKVY--LPEKSSNRLHIPDAFI-AY-LSPLKPEKVMLINHIGEYWHVNV--AYCDKGVFFLDGWQKFVNDNSLETADILVLKYDGDCWF--NV 93
                       77777..66778899********.67.33456678***************..77777888889***********************9999..77 PP

                       EEE- CS
                 B3 95 kvfr 98
                       k+  
  orange1.1g020807m 94 KIMG 97
                       7765 PP

2B334.83e-112223051297
                        HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS
                 B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97 
                        +++ l +p + +++ g+k    k++t+ de+g s+  +l ++k +++    kGW+ F++a++Lk  D+++ +++ +r ++ + +v+++
  orange1.1g020807m 222 RKNYLHVPSHVLKDLGLK--LAKKITILDERGYSFHGQLDIWKDGRQG--IKGWSAFCRAKKLKKDDICICEFThSRkMQNTIKVHIV 305
                        567899999999999999..7779***************888888773..37****************99775533348888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-225100IPR015300DNA-binding pseudobarrel domain
CDDcd100174.74E-15695No hitNo description
PROSITE profilePS5086312.337699IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.3E-21699IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-14896IPR003340B3 DNA binding domain
SMARTSM010194.2E-14899IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-15209304IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-14210304IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.022211308IPR003340B3 DNA binding domain
SMARTSM010190.0093213308IPR003340B3 DNA binding domain
CDDcd100172.13E-8222304No hitNo description
PfamPF023622.5E-9222305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAKCIPGFFK VYLPEKSSNR LHIPDAFIAY LSPLKPEKVM LINHIGEYWH VNVAYCDKGV  60
FFLDGWQKFV NDNSLETADI LVLKYDGDCW FNVKIMGKSG IEKTESYKED LWVEDEEEET  120
EEEEIGGEEA EEDCKDDSVF EVGDNDSAAD KDYIEEEDDD DEMTAITSCR GRINIGKSKK  180
RAVAKAGGSK AVYDINLLEV DVGDYGLYPN PYFVSKAWAG TRKNYLHVPS HVLKDLGLKL  240
AKKITILDER GYSFHGQLDI WKDGRQGIKG WSAFCRAKKL KKDDICICEF THSRKMQNTI  300
KVHIVQGVGS QSKAKRSRSK N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423126.10.0hypothetical protein CICLE_v10028843mg
RefseqXP_006479376.10.0PREDICTED: B3 domain-containing protein At5g57720-like
TrEMBLA0A067EE470.0A0A067EE47_CITSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-22B3 family protein